com.chemaxon.overlap.cli

Class CalculateSelfOverlap.SelfOverlap<D extends Descriptor,T extends Serializable>

java.lang.Object

com.chemaxon.overlap.cli.CalculateSelfOverlap.SelfOverlap<D,T>

Type Parameters:

D - Used descriptor

T - Unguarded form

All Implemented Interfaces:

Serializable

Enclosing class:

CalculateSelfOverlap

public static final class CalculateSelfOverlap.SelfOverlap<D extends Descriptor,T extends Serializable>
extends Object
implements Serializable

Data object for self overlap.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SelfOverlap(OverlapAnalysisContext<D,T> context, UnguardedPagedOverlap<T> desc, IndexProjector idp, MasterMoleculeStorage mms, MasterStorage<String> mids, KnnResults selfknn) Construct data object.

Method Summary

Modifier and Type	Method and Description
OverlapAnalysisContext<D,T>	getContext()
UnguardedPagedOverlap<T>	getDesc()
IndexProjector	getIdp()
MasterStorage<String>	getMids()
MasterMoleculeStorage	getMms()
KnnResults	getSelfKnn()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SelfOverlap

public SelfOverlap(OverlapAnalysisContext<D,T> context,
                   UnguardedPagedOverlap<T> desc,
                   IndexProjector idp,
                   MasterMoleculeStorage mms,
                   MasterStorage<String> mids,
                   KnnResults selfknn)

Construct data object.

Parameters:

context - Context to use

desc - Descriptor storage

idp - ID projector for storage

mms - Master molecule storage

mids - Master ID storage

selfknn - Self knn

Method Detail

getContext

public OverlapAnalysisContext<D,T> getContext()

getDesc

public UnguardedPagedOverlap<T> getDesc()

getIdp

public IndexProjector getIdp()

getMms

public MasterMoleculeStorage getMms()

getMids

public MasterStorage<String> getMids()

getSelfKnn

public KnnResults getSelfKnn()