| com.chemaxon.apidiscovery |
API Discovery framework.
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| com.chemaxon.apidiscovery.annotations |
Annotations used by the API Discovery framework.
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| com.chemaxon.apidiscovery.interfaces |
Interfaces introduced for the API Discovery framework.
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| com.chemaxon.apidiscovery.linenote |
Linear parameter notation utilities.
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| com.chemaxon.apidiscovery.util |
Various utilities.
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| com.chemaxon.calculations.common |
Common components of Calculator APIs.
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| com.chemaxon.calculations.io |
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| com.chemaxon.calculations.io.formats |
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| com.chemaxon.calculations.logging.moleculeawarelog |
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| com.chemaxon.calculations.util |
Various utilities used in calculations, descriptors, clustering and overlap analysis.
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| com.chemaxon.calculations.util.cellfield |
Simple cell field api.
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| com.chemaxon.calculations.util.cellfield.impl |
Cellfield utility implementations.
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| com.chemaxon.clustering.common |
Common components of clustering related APIs.
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| com.chemaxon.clustering.framework |
Hierarchic structural framework based clustering.
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| com.chemaxon.clustering.singlelinkage |
Single linkage clustering algorithm.
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| com.chemaxon.clustering.sphex |
Sphere exclusion clustering algorithm.
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| com.chemaxon.clustering.util |
Clustering related utilities.
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| com.chemaxon.clustering.wards |
Ward's minimum variance implemented as a generic agglomerative hierarchical clustering algorithm.
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| com.chemaxon.descriptors.alignment |
3D flexible alignment based molecular shape similarity calculation.
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| com.chemaxon.descriptors.alignment.drshape |
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| com.chemaxon.descriptors.alignment.shape |
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| com.chemaxon.descriptors.alternates |
Alternate implementations allowing integration testing.
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| com.chemaxon.descriptors.alternates.cli |
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| com.chemaxon.descriptors.common |
Unguarded descriptor handling.
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| com.chemaxon.descriptors.common.binary |
Default implementation and utilities for binary vector (bit string) descriptors.
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| com.chemaxon.descriptors.common.comparison |
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| com.chemaxon.descriptors.common.comparison.impl |
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| com.chemaxon.descriptors.common.realvector |
Default implementation for real vector descriptors.
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| com.chemaxon.descriptors.common.reflect |
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| com.chemaxon.descriptors.common.unguarded |
Interfaces for Descriptors API unguarded representations.
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| com.chemaxon.descriptors.common.unguarded.impl |
Unguarded descriptor handling implementations.
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| com.chemaxon.descriptors.common.unguarded.impl.calc |
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| com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong |
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| com.chemaxon.descriptors.common.unguarded.impl.calc.floats |
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| com.chemaxon.descriptors.common.unguarded.impl.calc.scaledbytesfv |
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| com.chemaxon.descriptors.common.unguarded.impl.calc.scaledshortsfv |
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| com.chemaxon.descriptors.common.unguarded.impl.extractors |
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| com.chemaxon.descriptors.db |
Interfaces for database import/export.
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| com.chemaxon.descriptors.fingerprints.cfp |
API of the Chemaxon hashed fingerprint family molecular descriptors.
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| com.chemaxon.descriptors.fingerprints.ecfp |
API of the ECFP fingerprint family molecular descriptors.
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| com.chemaxon.descriptors.fingerprints.maccs |
ChemAxon implementation of the MACCS 166 bit fingerprints.
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| com.chemaxon.descriptors.fingerprints.maccs.cli |
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| com.chemaxon.descriptors.fingerprints.pf2d |
API of the 2D pharmacophore fingerprint family molecular descriptors.
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| com.chemaxon.descriptors.metrics |
Common descriptor comparison metrics.
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| com.chemaxon.descriptors.vectors.binary |
Generic binary vector descriptors.
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| com.chemaxon.descriptors.vectors.floats |
Generic floating point vector descriptors.
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| com.chemaxon.overlap |
Overlap analysis related codes.
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| com.chemaxon.overlap.bruteforce |
Brute force similarity search.
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| com.chemaxon.overlap.cli |
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| com.chemaxon.overlap.cli.invocation |
Utilities to handle command line interface invocations.
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| com.chemaxon.overlap.cli.prof |
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| com.chemaxon.overlap.cli.util |
Utilities for command line interfaces.
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| com.chemaxon.overlap.cli.util.images |
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| com.chemaxon.overlap.cli.util.importing |
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| com.chemaxon.overlap.cli.util.pages |
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| com.chemaxon.overlap.cli.util.pipeline |
Importing pipeline utilities.
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| com.chemaxon.overlap.cli.util.prop |
Property extraction.
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| com.chemaxon.overlap.cli.util.prop.impl |
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| com.chemaxon.overlap.concurrent |
Concurrency related utilities.
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| com.chemaxon.overlap.concurrent.impl |
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| com.chemaxon.overlap.context |
Overlap analysis context related.
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| com.chemaxon.overlap.io |
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| com.chemaxon.overlap.partialresult |
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| com.chemaxon.overlap.persistence.serialization |
Utilities for high performance serialization/deserialization.
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| com.chemaxon.overlap.persistence.storage |
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| com.chemaxon.overlap.presenter |
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| com.chemaxon.overlap.result |
Overlap analysis related result types.
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| com.chemaxon.overlap.result.impl |
Overlap analysis related result type implementations.
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| com.chemaxon.overlap.service |
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| com.chemaxon.overlap.service.async |
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| com.chemaxon.overlap.service.task |
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| com.chemaxon.overlap.servlets |
This package is deprecated.
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| com.chemaxon.overlap.splits |
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| com.chemaxon.overlap.storage |
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| com.chemaxon.overlap.storage.impl |
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| com.chemaxon.overlap.unguarded |
Unguarded descriptor handling.
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| com.chemaxon.overlap.util.idgenerator |
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| com.chemaxon.overlap.version |
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| com.chemaxon.overlap.wui |
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| com.chemaxon.overlap.wui.application |
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| com.chemaxon.overlap.wui.context |
WebUI context API.
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| com.chemaxon.overlap.wui.context.features |
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| com.chemaxon.overlap.wui.dto |
Data transfer objects used by the fast similarity search web application.
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| com.chemaxon.overlap.wui.res |
WebUI classes exposed as resources.
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| com.chemaxon.overlap.wui.res.annotations |
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| com.chemaxon.overlap.wui.res.search |
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| com.chemaxon.overlap.wui.resources |
JAX-RS resource classes exposed by the REST interface.
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| com.chemaxon.overlap.wui.resources.exceptions |
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| com.chemaxon.screen |
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| com.chemaxon.screen.desktop |
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| com.chemaxon.virtuallib.sc.cli |
CLI for scaffold conversion.
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| com.chemaxon.virtuallib.sc.model.sdf |
Model of SDF based virtual library description.
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