com.chemaxon.overlap.wui.dto

Class ConversionRequest

java.lang.Object

com.chemaxon.overlap.wui.dto.ConversionRequest

public class ConversionRequest
extends Object

Molecule conversion request.

Field Summary

Fields

Modifier and Type	Field and Description
boolean	binary Use binary format by invoking MolExporter#exportToBinFormat(chemaxon.struc.Molecule, java.lang.String) and base64 encoding the result.
boolean	clean2d Invoke Clean2D (Cleaner#clean(chemaxon.struc.MoleculeGraph, int)) on the imported structure.
String	f Format string to pass to MolExporter#exportToFormat(chemaxon.struc.Molecule, java.lang.String).
String	importopts Import options or null/empty string.
String	mol Molecule to convert.
String	molname Molecule name to set.
Map<String,String>	molprops Molecule properties to set.
Map<Integer,String>	pseudos Pseudo atoms to set.

Constructor Summary

Constructors

Constructor and Description
ConversionRequest()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mol

public String mol

Molecule to convert. Input is parsed using MolImporter#importMol(java.lang.String) when no import option specified; otherwise using MolImporter#importMol(java.lang.String, java.lang.String)

importopts

public String importopts

Import options or null/empty string.

f

public String f

Format string to pass to MolExporter#exportToFormat(chemaxon.struc.Molecule, java.lang.String).

binary

public boolean binary

Use binary format by invoking MolExporter#exportToBinFormat(chemaxon.struc.Molecule, java.lang.String) and base64 encoding the result.

clean2d

public boolean clean2d

Invoke Clean2D (Cleaner#clean(chemaxon.struc.MoleculeGraph, int)) on the imported structure.

molname

public String molname

Molecule name to set. Molecule name is set when value is not null. Previous molecule name is overriden. When value is not null it is passed to method Molecule.setName(java.lang.String) of the imported structure. Note that the passed method treats null and empty String ("") values the same way.

molprops

public Map<String,String> molprops

Molecule properties to set. A molecule property is set for every entry passed. All key-value pairs (including possible null ones) are passed to Molecule.setProperty(java.lang.String, java.lang.String).

pseudos

public Map<Integer,String> pseudos

Pseudo atoms to set. The specified atom indices will be transformed to pseudo atoms (setting MolAtom.setAtno(int)) to MolAtom.PSEUDO and their alias will be set using MolAtom.setAliasstr(java.lang.String). The alias values will be escaped by a "\{" prefix and "}" suffix to prevent formatting.

Constructor Detail

ConversionRequest

public ConversionRequest()