Hierarchy For All Packages

Package Hierarchies:

• com.chemaxon.apidiscovery,
• com.chemaxon.apidiscovery.annotations,
• com.chemaxon.apidiscovery.interfaces,
• com.chemaxon.apidiscovery.linenote,
• com.chemaxon.apidiscovery.util,
• com.chemaxon.calculations.common,
• com.chemaxon.calculations.io,
• com.chemaxon.calculations.io.formats,
• com.chemaxon.calculations.logging.moleculeawarelog,
• com.chemaxon.calculations.util,
• com.chemaxon.calculations.util.cellfield,
• com.chemaxon.calculations.util.cellfield.impl,
• com.chemaxon.clustering.common,
• com.chemaxon.clustering.framework,
• com.chemaxon.clustering.singlelinkage,
• com.chemaxon.clustering.sphex,
• com.chemaxon.clustering.util,
• com.chemaxon.clustering.wards,
• com.chemaxon.descriptors.alignment,
• com.chemaxon.descriptors.alignment.drshape,
• com.chemaxon.descriptors.alignment.shape,
• com.chemaxon.descriptors.alternates,
• com.chemaxon.descriptors.alternates.cli,
• com.chemaxon.descriptors.common,
• com.chemaxon.descriptors.common.binary,
• com.chemaxon.descriptors.common.comparison,
• com.chemaxon.descriptors.common.comparison.impl,
• com.chemaxon.descriptors.common.realvector,
• com.chemaxon.descriptors.common.reflect,
• com.chemaxon.descriptors.common.unguarded,
• com.chemaxon.descriptors.common.unguarded.impl,
• com.chemaxon.descriptors.common.unguarded.impl.calc,
• com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong,
• com.chemaxon.descriptors.common.unguarded.impl.calc.floats,
• com.chemaxon.descriptors.common.unguarded.impl.calc.scaledbytesfv,
• com.chemaxon.descriptors.common.unguarded.impl.calc.scaledshortsfv,
• com.chemaxon.descriptors.common.unguarded.impl.extractors,
• com.chemaxon.descriptors.db,
• com.chemaxon.descriptors.fingerprints.cfp,
• com.chemaxon.descriptors.fingerprints.ecfp,
• com.chemaxon.descriptors.fingerprints.maccs,
• com.chemaxon.descriptors.fingerprints.maccs.cli,
• com.chemaxon.descriptors.fingerprints.pf2d,
• com.chemaxon.descriptors.metrics,
• com.chemaxon.descriptors.vectors.binary,
• com.chemaxon.descriptors.vectors.floats,
• com.chemaxon.overlap,
• com.chemaxon.overlap.bruteforce,
• com.chemaxon.overlap.cli,
• com.chemaxon.overlap.cli.invocation,
• com.chemaxon.overlap.cli.prof,
• com.chemaxon.overlap.cli.util,
• com.chemaxon.overlap.cli.util.images,
• com.chemaxon.overlap.cli.util.importing,
• com.chemaxon.overlap.cli.util.pages,
• com.chemaxon.overlap.cli.util.pipeline,
• com.chemaxon.overlap.cli.util.prop,
• com.chemaxon.overlap.cli.util.prop.impl,
• com.chemaxon.overlap.concurrent,
• com.chemaxon.overlap.concurrent.impl,
• com.chemaxon.overlap.context,
• com.chemaxon.overlap.io,
• com.chemaxon.overlap.partialresult,
• com.chemaxon.overlap.persistence.serialization,
• com.chemaxon.overlap.persistence.storage,
• com.chemaxon.overlap.presenter,
• com.chemaxon.overlap.result,
• com.chemaxon.overlap.result.impl,
• com.chemaxon.overlap.service,
• com.chemaxon.overlap.service.async,
• com.chemaxon.overlap.service.task,
• com.chemaxon.overlap.servlets,
• com.chemaxon.overlap.splits,
• com.chemaxon.overlap.storage,
• com.chemaxon.overlap.storage.impl,
• com.chemaxon.overlap.unguarded,
• com.chemaxon.overlap.util.idgenerator,
• com.chemaxon.overlap.version,
• com.chemaxon.overlap.wui,
• com.chemaxon.overlap.wui.application,
• com.chemaxon.overlap.wui.context,
• com.chemaxon.overlap.wui.context.features,
• com.chemaxon.overlap.wui.dto,
• com.chemaxon.overlap.wui.res,
• com.chemaxon.overlap.wui.res.annotations,
• com.chemaxon.overlap.wui.res.search,
• com.chemaxon.overlap.wui.resources,
• com.chemaxon.overlap.wui.resources.exceptions,
• com.chemaxon.screen,
• com.chemaxon.screen.desktop,
• com.chemaxon.virtuallib.sc.cli,
• com.chemaxon.virtuallib.sc.model.sdf

Class Hierarchy

• java.lang.Object
  • com.chemaxon.overlap.persistence.serialization.AbstractSerialization<S,D> (implements com.chemaxon.overlap.persistence.serialization.Deserializer<T>, com.chemaxon.overlap.persistence.serialization.Serializer<T>)
    • com.chemaxon.overlap.persistence.storage.CompactStringStorageSerialization
    • com.chemaxon.overlap.persistence.storage.MasterMoleculeStorageSerialization
  • com.chemaxon.descriptors.alignment.AbstractShapeComparator<T> (implements com.chemaxon.descriptors.alignment.ShapeComparator<T>)
    • com.chemaxon.descriptors.alignment.drshape.DRShapeHistogramComparator
    • com.chemaxon.descriptors.alignment.drshape.DRShapeIntersectionComparator
    • com.chemaxon.descriptors.alignment.drshape.DRShapeTanimotoComparator
    • com.chemaxon.descriptors.alignment.shape.ShapeIntersectionComparator
    • com.chemaxon.descriptors.alignment.shape.ShapeTanimotoComparator
  • com.chemaxon.descriptors.alignment.AbstractShapeGenerator<D,P> (implements com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.alignment.shape.ShapeGenerator
  • com.chemaxon.descriptors.alignment.AbstractShapeGeneratorParameter (implements com.chemaxon.descriptors.common.DescriptorParameters)
    • com.chemaxon.descriptors.alignment.drshape.DRShapeGeneratorParameter
    • com.chemaxon.descriptors.alignment.shape.ShapeGeneratorParameter
  • com.chemaxon.overlap.io.AllAbsentMasterMoleculeStorage (implements com.chemaxon.overlap.io.MasterMoleculeStorage)
  • com.chemaxon.overlap.splits.AllButFirstToken (implements com.google.common.base.Function<F,T>)
  • javax.ws.rs.core.Application
    • org.glassfish.jersey.server.ResourceConfig (implements javax.ws.rs.core.Configurable<C>, org.glassfish.jersey.server.ServerConfig)
      • com.chemaxon.overlap.wui.application.Application
  • com.chemaxon.overlap.service.async.AsyncCall<R>
  • com.chemaxon.overlap.wui.dto.AsyncCallDto<T>
  • com.chemaxon.overlap.presenter.AsyncCallPresenter
  • com.chemaxon.overlap.service.async.AsyncCallService (implements java.io.Closeable)
  • com.chemaxon.virtuallib.sc.model.sdf.Attachment (implements java.io.Serializable)
  • com.chemaxon.virtuallib.sc.model.sdf.AttachmentGroupImpl (implements com.chemaxon.virtuallib.sc.model.sdf.AttachmentGroup)
    • com.chemaxon.virtuallib.sc.model.sdf.IndexedAttachmentGroupImpl (implements com.chemaxon.virtuallib.sc.model.sdf.IndexedAttachmentGroup)
  • com.chemaxon.calculations.common.AutoThrottles
  • com.chemaxon.descriptors.alignment.BaseShapeComparatorParameter (implements java.io.Serializable)
    • com.chemaxon.descriptors.alignment.drshape.DRShapeComparatorParameter
    • com.chemaxon.descriptors.alignment.shape.ShapeComparatorParameter (implements java.io.Serializable)
  • com.chemaxon.overlap.concurrent.BatchedPagedProcessor
  • com.chemaxon.clustering.framework.BemisMurckoClustering
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongCommonpart (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongCommonpartNormalized (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.comparison.impl.BinaryLongComparisonContextFactory (implements com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongDice (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongEuclidean (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongEuclideanNormalized (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.extractors.BinaryLongFpExtractor (implements com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongManhattan (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongManhattanNormalized (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongPetke (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongSimpson (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongTanimoto (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.binarylong.BinaryLongTversky (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.metrics.BinaryVectorComparator.Util
  • com.chemaxon.descriptors.common.binary.BinaryVectorDescriptorComparator (implements com.chemaxon.descriptors.common.DescriptorComparator<D>)
  • com.chemaxon.descriptors.common.binary.BinaryVectorDescriptorImpl (implements com.chemaxon.descriptors.common.BinaryVectorDescriptor)
  • com.chemaxon.descriptors.common.binary.BinaryVectorDescriptorSerializer (implements com.chemaxon.descriptors.common.DescriptorSerializer<B>)
  • com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory.ToLinenote<C> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.descriptors.common.BinaryVectors
  • com.chemaxon.descriptors.fingerprints.maccs.cli.BitArrayToBitSet
  • java.util.BitSet (implements java.lang.Cloneable, java.io.Serializable)
    • com.chemaxon.descriptors.fingerprints.maccs.RingAtomBs
    • com.chemaxon.descriptors.fingerprints.maccs.RingBondBs
  • com.chemaxon.overlap.cli.util.images.BorderedPane (implements com.chemaxon.overlap.cli.util.images.SubPane)
  • com.chemaxon.overlap.concurrent.impl.BppParameters
  • com.chemaxon.overlap.bruteforce.BruteForcePagedSimilarity<D>
  • com.chemaxon.overlap.cli.util.images.BufferedImageRenderer (implements com.chemaxon.overlap.cli.util.images.Renderer)
  • com.chemaxon.overlap.cli.util.images.BufferedImageRendering (implements com.chemaxon.overlap.cli.util.images.Rendering<T>)
  • com.chemaxon.overlap.cli.BuildStorage
  • com.chemaxon.overlap.cli.BuildStorageStat
  • com.chemaxon.descriptors.vectors.binary.BvGeneratorImpl (implements com.chemaxon.descriptors.vectors.binary.BvGenerator)
  • com.chemaxon.descriptors.vectors.binary.BvGeneratorImpl.Service (implements com.chemaxon.descriptors.vectors.binary.BvParameters.ConstructBvGenerator)
  • com.chemaxon.descriptors.vectors.binary.BvParameters (implements com.chemaxon.descriptors.common.DescriptorParameters, java.io.Serializable)
  • com.chemaxon.descriptors.vectors.binary.BvParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.overlap.service.CalculateDissimilarityDistributionService
  • com.chemaxon.overlap.cli.CalculateOverlap
  • com.chemaxon.overlap.cli.CalculateOverlap.OverlapResult<D,T> (implements java.io.Serializable)
  • com.chemaxon.overlap.cli.CalculateOverlapParameters
  • com.chemaxon.overlap.cli.CalculateOverlapParameters.NoSplitter (implements com.beust.jcommander.converters.IParameterSplitter)
  • com.chemaxon.overlap.cli.CalculateOverlapStat
  • com.chemaxon.overlap.cli.CalculateSelfOverlap
  • com.chemaxon.overlap.cli.CalculateSelfOverlap.SelfOverlap<D,T> (implements java.io.Serializable)
  • com.chemaxon.calculations.common.CancelObserverImpl (implements com.chemaxon.calculations.common.CancelObserver)
  • com.chemaxon.calculations.util.cellfield.impl.CellFieldImpl (implements com.chemaxon.calculations.util.cellfield.CellField)
  • com.chemaxon.calculations.util.cellfield.impl.CellFieldImpl.ConstructWrapper (implements com.chemaxon.calculations.util.cellfield.CellFields.ConstructNewCellFieldImpl)
  • com.chemaxon.calculations.util.cellfield.CellFields
  • com.chemaxon.descriptors.alternates.CfpBsWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.alternates.CfpDsWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.fingerprints.cfp.CfpParameters (implements com.chemaxon.descriptors.common.DescriptorParameters)
  • com.chemaxon.descriptors.fingerprints.cfp.CfpParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.fingerprints.cfp.CfpTableReaderImpl.CfpReaderFactoryImpl (implements com.chemaxon.descriptors.fingerprints.cfp.CfpTableReader.Factory)
  • com.chemaxon.overlap.cli.util.pipeline.CharIterator
  • com.chemaxon.calculations.util.CharLayout
  • com.chemaxon.overlap.cli.util.prop.impl.ChemTermPropertyExtractor<T> (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractor<T>)
  • com.chemaxon.overlap.cli.util.prop.impl.ChemTermPropertyExtractorFactory (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractorFactory)
  • com.chemaxon.descriptors.alternates.Clean2dWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.overlap.cli.invocation.CliInvocation
  • com.chemaxon.overlap.cli.util.prop.CliParam (implements java.io.Serializable)
  • com.chemaxon.overlap.cli.util.prop.CliParam.Converter (implements com.beust.jcommander.IStringConverter<T>)
  • com.chemaxon.overlap.cli.util.CliUtil
  • com.chemaxon.overlap.cli.util.pipeline.CloneCxnMolecule (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.calculations.io.CloseableIterators
  • com.chemaxon.calculations.io.CloseableSinks
  • com.chemaxon.calculations.util.CmdlineUtils
  • com.chemaxon.overlap.cli.util.pipeline.CollectStorage (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.screen.Column
  • com.chemaxon.calculations.util.cellfield.impl.ColumnImpl<T> (implements com.chemaxon.calculations.util.cellfield.Column<T>)
  • com.chemaxon.overlap.io.CompactStringStorage (implements com.chemaxon.overlap.io.MasterStringStorage)
  • com.chemaxon.overlap.io.CompactStringStorage.Builder (implements com.chemaxon.overlap.io.MasterStorages.MasterStorageBuilder<T>)
  • com.chemaxon.descriptors.common.comparison.impl.ComparisonContextImpl<DC,D,T> (implements com.chemaxon.descriptors.common.comparison.ComparisonContext<DC,D,T>)
  • com.chemaxon.overlap.cli.util.pipeline.Connect (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.calculations.common.ConsolePO (implements com.chemaxon.calculations.common.SubProgressObserver)
  • com.chemaxon.descriptors.fingerprints.cfp.ConstructCfpGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.cfp.CfpParameters.ConstructCfpGenerator)
  • com.chemaxon.descriptors.fingerprints.ecfp.ConstructEcfpGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters.ConstructEcfpGenerator)
  • com.chemaxon.descriptors.fingerprints.maccs.ConstructMaccsGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.maccs.MaccsParameters.ConstructMaccsGenerator)
  • com.chemaxon.descriptors.fingerprints.pf2d.ConstructPfGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.pf2d.PfParameters.ConstructPfGenerator)
  • com.chemaxon.descriptors.fingerprints.ecfp.ConstructThreadLocalizedEcfpGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.ecfp.ThreadLocalizedEcfpParameters.ConstructThreadLocalizedEcfpGenerator)
  • com.chemaxon.descriptors.fingerprints.pf2d.ConstructThreadLocalizedPfGeneratorImpl (implements com.chemaxon.descriptors.fingerprints.pf2d.ThreadLocalizedPfParameters.ConstructThreadLocalizedPfGenerator)
  • com.chemaxon.overlap.ContextJsTools
  • com.chemaxon.overlap.wui.context.Contexts
  • com.chemaxon.overlap.wui.context.ContextsProvider
  • com.chemaxon.overlap.wui.dto.ConversionRequest
  • com.chemaxon.overlap.wui.dto.ConversionResult
  • com.chemaxon.virtuallib.sc.cli.Converter
  • com.chemaxon.virtuallib.sc.cli.ConverterParameters
  • com.chemaxon.virtuallib.sc.cli.ConvertGroup
  • com.chemaxon.virtuallib.sc.cli.ConvertGroupParameters
  • com.chemaxon.overlap.cli.CreateAllAbsentMms
  • com.chemaxon.overlap.cli.CreateAllAbsentMmsParameters
  • com.chemaxon.overlap.cli.CreateMms
  • com.chemaxon.overlap.cli.CreateMmsParameters
  • com.chemaxon.overlap.cli.CreateMmsStat
  • com.chemaxon.apidiscovery.CreatorWrapper<T>
  • com.chemaxon.overlap.cli.util.pipeline.CxnFormatsMolExporter (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.cli.util.pipeline.CxnFormatsMolImporter (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.calculations.util.DefaultCmdlineContext (implements com.chemaxon.calculations.util.CmdlineContext)
  • com.chemaxon.overlap.persistence.serialization.DelegatingDeserializer<T> (implements com.chemaxon.overlap.persistence.serialization.Deserializer<T>)
  • com.chemaxon.overlap.wui.res.DescRes (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasSizeinfo)
  • com.chemaxon.overlap.wui.res.search.DescResMostSimilarsSearch
  • com.chemaxon.overlap.wui.res.search.DescResMostSimilarsSearch.MostSimilarSearchParams
  • com.chemaxon.overlap.wui.res.search.DescResMostSimilarsSearch.MostSimilarsSearchResult
  • com.chemaxon.overlap.wui.context.Descriptor (implements com.chemaxon.overlap.wui.context.ResourceClass<T>)
  • com.chemaxon.overlap.persistence.storage.DescriptorContainer<T> (implements java.io.Serializable)
  • com.chemaxon.overlap.wui.dto.DescriptorInfo
  • com.chemaxon.descriptors.fingerprints.maccs.cli.DescriptorPreChecker
  • com.chemaxon.overlap.wui.dto.DescriptorsInfo
  • com.chemaxon.overlap.wui.resources.DescriptorsResource
  • com.chemaxon.screen.DescriptorStorage<D,T>
  • com.chemaxon.overlap.cli.util.DescriptorsWithIdsImpl<T> (implements com.chemaxon.overlap.cli.util.DescriptorsWithIds<T>)
  • com.chemaxon.overlap.cli.util.DescriptorsWithMolsImpl<T> (implements com.chemaxon.overlap.cli.util.DescriptorsWithMols<T>)
  • com.chemaxon.apidiscovery.Discovery
  • com.chemaxon.overlap.bruteforce.DissimilarityDistributionCalculation
  • com.chemaxon.overlap.wui.dto.DissimilarityDistributionRequest
  • com.chemaxon.overlap.wui.dto.DissimilarityDistributionResult
  • com.chemaxon.overlap.wui.dto.DissimilarityTargetInfo
  • com.chemaxon.overlap.cli.util.images.DrawMoleculeToRenderer
  • com.chemaxon.descriptors.alignment.drshape.DRShape (implements com.chemaxon.descriptors.alignment.DRShapeDescriptor)
  • com.chemaxon.descriptors.alignment.drshape.DRShapeComparatorParameter.Builder (implements com.chemaxon.descriptors.alignment.FlexibilityModeParameterBuilder, com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.alignment.drshape.DRShapeGenerator (implements com.chemaxon.descriptors.common.DescriptorGenerator<B>)
  • com.chemaxon.descriptors.alignment.drshape.DRShapeGeneratorParameter.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.overlap.cli.DumpStorage
  • com.chemaxon.overlap.cli.DumpStorageParameters
  • com.chemaxon.descriptors.alternates.EcfpBsWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.alternates.EcfpDsWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters (implements com.chemaxon.descriptors.common.DescriptorParameters)
  • com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.fingerprints.ecfp.EcfpTableReaderImpl.EcfpReaderFactoryImpl (implements com.chemaxon.descriptors.fingerprints.ecfp.EcfpTableReader.Factory)
  • com.chemaxon.overlap.cli.invocation.EHandler
  • com.chemaxon.overlap.concurrent.ErrorHandlers
  • com.chemaxon.overlap.wui.dto.ErrorReport
  • com.chemaxon.overlap.service.task.ExecutionMonitoring<R>
  • com.chemaxon.overlap.wui.dto.ExperimentalAddMoleculesRequest
  • com.chemaxon.overlap.wui.resources.ExperimentalAsyncCallsResource
  • com.chemaxon.overlap.wui.res.ExperimentalRawFile (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasBasicSizeinfo)
  • com.chemaxon.overlap.wui.dto.ExperimentalRawFileInfo
  • com.chemaxon.overlap.wui.resources.ExperimentalRawFilesContentResource
  • com.chemaxon.overlap.wui.dto.ExperimentalRawFilesInfo
  • com.chemaxon.overlap.wui.resources.ExperimentalRawFilesResource
  • com.chemaxon.overlap.wui.resources.ExperimentalResource
  • com.chemaxon.overlap.wui.context.features.FeatureConfig
  • com.chemaxon.overlap.wui.context.features.FeatureConfigProvider
  • com.chemaxon.overlap.service.FindMostSimilarsService
  • com.chemaxon.overlap.splits.FirstToken (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.result.impl.FixedKnnResultsImpl (implements com.chemaxon.overlap.result.KnnResults)
  • com.chemaxon.descriptors.common.reflect.FixedValueInvocationHandler (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.descriptors.common.comparison.impl.FloatsComparisonContextFactory (implements com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsEuclid (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsEuclidSqr (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.extractors.FloatsExtractor (implements com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsManhattan (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsMaxDiff (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsTanimoto (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.floats.FloatsTversky (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.metrics.FloatVectorComparator.Util
  • com.chemaxon.descriptors.common.realvector.FloatVectorDescriptorComparator (implements com.chemaxon.descriptors.common.DescriptorComparator<D>)
  • com.chemaxon.descriptors.common.realvector.FloatVectorDescriptorImpl (implements com.chemaxon.descriptors.common.FloatVectorDescriptor)
    • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFPImpl (implements com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP)
  • com.chemaxon.descriptors.metrics.FloatVectorMetricFactory.ToLinenote<C> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.descriptors.common.reflect.ForwardingInvocationHandler (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.descriptors.fingerprints.maccs.cli.FpDiff
  • com.chemaxon.descriptors.fingerprints.maccs.cli.FpDiffParameters
  • com.chemaxon.clustering.framework.FrameworkClustering
  • com.chemaxon.clustering.framework.FrameworkClusteringResultsMolImpl (implements com.chemaxon.clustering.framework.FrameworkClusteringResults)
  • com.chemaxon.clustering.framework.FrameworkClusteringResultsSmiImpl (implements com.chemaxon.clustering.framework.FrameworkClusteringResults)
  • com.chemaxon.descriptors.vectors.floats.FvGeneratorImpl (implements com.chemaxon.descriptors.vectors.floats.FvGenerator)
  • com.chemaxon.descriptors.vectors.floats.FvParameters (implements com.chemaxon.descriptors.common.DescriptorParameters, java.io.Serializable)
  • com.chemaxon.descriptors.vectors.floats.FvParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.overlap.wui.dto.GarbageCollectorInfoDto
  • com.chemaxon.overlap.wui.resources.GenerateErrorResponse
  • com.chemaxon.descriptors.fingerprints.maccs.GenerateMaccsFp (implements java.io.Serializable)
  • javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • javax.servlet.http.HttpServlet
      • com.chemaxon.overlap.servlets.KnnServlet
      • com.chemaxon.overlap.servlets.MetaServlet
      • com.chemaxon.overlap.servlets.MolsServlet
      • com.chemaxon.overlap.servlets.SelfOverlapServlet
  • com.chemaxon.descriptors.fingerprints.maccs.cli.GenerMaccs
  • com.chemaxon.overlap.cli.util.pipeline.GetMoleculeName (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.cli.util.pipeline.GetSdfProperty (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.wui.dto.GridInfo
  • com.chemaxon.overlap.cli.util.images.GridPane (implements com.chemaxon.overlap.cli.util.images.SubPane)
  • com.chemaxon.overlap.wui.res.GridRes (implements com.chemaxon.overlap.wui.res.Described)
  • com.chemaxon.overlap.wui.dto.GridsInfo
  • com.chemaxon.overlap.wui.resources.GridsResource
  • com.chemaxon.descriptors.fingerprints.maccs.GsSearch (implements java.io.Serializable)
    • com.chemaxon.descriptors.fingerprints.maccs.cli.GSearch
  • com.chemaxon.descriptors.common.Guarded.EnsureThat
  • com.chemaxon.descriptors.common.Guarded.New
  • com.chemaxon.descriptors.common.reflect.GuardedSerializableReturnValue (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.descriptors.common.reflect.GuardedSingleArgument (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.overlap.wui.Gui
  • com.chemaxon.overlap.cli.util.images.HeatmapBuilder
  • com.chemaxon.overlap.cli.util.images.HeatmapRenderingParameters
  • com.chemaxon.overlap.cli.util.images.HFlowPane (implements com.chemaxon.overlap.cli.util.images.SubPane)
  • com.chemaxon.calculations.util.Histo
  • com.chemaxon.overlap.wui.dto.Histogram
  • com.chemaxon.clustering.common.IDBasedAssignerBuilder
  • com.chemaxon.clustering.common.IDBasedClusterBuilder
  • com.chemaxon.clustering.common.IDBasedHierarchicClusterBuidler
  • com.chemaxon.overlap.splits.Identity (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.cli.util.Imports
  • com.chemaxon.overlap.cli.ImportStorage
  • com.chemaxon.overlap.cli.ImportStorageParameters
  • com.chemaxon.overlap.result.impl.IndexedKnnResultsImpl (implements com.chemaxon.overlap.result.KnnResults, java.io.Serializable)
  • com.chemaxon.overlap.io.IndexProjectors
  • com.chemaxon.overlap.io.IndexProjectors.IndexProjectorBuilder
  • com.chemaxon.overlap.io.IndexProjectors.IndexProjectorMcb (implements com.chemaxon.overlap.io.MoleculeCallback)
  • java.io.InputStream (implements java.io.Closeable)
    • com.chemaxon.overlap.cli.util.pipeline.InputStreamStatCollector
  • com.chemaxon.apidiscovery.InstanceWrapper<T>
  • com.chemaxon.overlap.wui.resources.exceptions.JacksonJsonMappingExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
  • com.chemaxon.overlap.wui.resources.exceptions.JacksonJsonParseExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
  • com.chemaxon.overlap.wui.resources.exceptions.JacksonUnrecognizedPropertyExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
  • com.chemaxon.screen.desktop.JettyStarter
  • com.chemaxon.overlap.cli.JsEval
  • com.chemaxon.overlap.cli.JsEvalParameters
  • com.chemaxon.overlap.wui.context.Knn (implements com.chemaxon.overlap.wui.context.ResourceClass<T>)
  • com.chemaxon.overlap.wui.dto.KnnInfo
    • com.chemaxon.overlap.wui.dto.KnnData
  • com.chemaxon.overlap.wui.res.KnnRes (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasBasicSizeinfo)
  • com.chemaxon.overlap.wui.resources.KnnResource
  • com.chemaxon.overlap.result.impl.KnnResultsBuilder
  • com.chemaxon.overlap.wui.dto.KnnsInfo
  • com.chemaxon.overlap.wui.dto.KnnTableLabelEntry
  • com.chemaxon.overlap.wui.dto.KnnTableLabels
  • com.chemaxon.clustering.wards.LanceWilliamsAlgorithm
  • com.chemaxon.clustering.wards.LanceWilliamsMerges
  • com.chemaxon.clustering.wards.LanceWilliamsMerges.AverageLinkage (implements com.chemaxon.clustering.wards.LanceWilliamsMerge)
  • com.chemaxon.clustering.wards.LanceWilliamsMerges.CompleteLinkage (implements com.chemaxon.clustering.wards.LanceWilliamsMerge)
  • com.chemaxon.clustering.wards.LanceWilliamsMerges.SingleLinkage (implements com.chemaxon.clustering.wards.LanceWilliamsMerge)
  • com.chemaxon.clustering.wards.LanceWilliamsMerges.Wards (implements com.chemaxon.clustering.wards.LanceWilliamsMerge)
  • com.chemaxon.overlap.result.impl.LinearHistogramBuilder
  • com.chemaxon.descriptors.common.realvector.LinearScalerImpl (implements com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
  • com.chemaxon.descriptors.common.realvector.LinearScalerUtil
  • org.apache.commons.io.LineIterator (implements java.util.Iterator<E>)
    • com.chemaxon.calculations.util.CloseableLineIterator (implements com.chemaxon.calculations.io.CloseableIterator<T>)
  • com.chemaxon.overlap.wui.dto.LinenoteChoiceDto
  • com.chemaxon.overlap.wui.dto.LinenoteChoiceParameterDto
  • com.chemaxon.overlap.wui.dto.LinenoteChoiceParameterValueDto
  • com.chemaxon.overlap.wui.dto.LinenoteDto
  • com.chemaxon.apidiscovery.linenote.Linenotes
  • com.chemaxon.calculations.common.ListenableObserver (implements com.chemaxon.calculations.common.ProgressObserver)
  • com.chemaxon.overlap.wui.dto.LoadingStatusDto
  • org.apache.commons.logging.LogFactory
    • com.chemaxon.calculations.logging.moleculeawarelog.MoleculeAwareLogFactory
  • com.chemaxon.overlap.wui.context.LookupParamConverterProvider (implements javax.ws.rs.ext.ParamConverterProvider)
  • com.chemaxon.descriptors.alternates.Maccs166BinaryString (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.fingerprints.maccs.cli.MaccsBenchmark
  • com.chemaxon.descriptors.fingerprints.maccs.MaccsParameters (implements com.chemaxon.descriptors.common.DescriptorParameters)
  • com.chemaxon.descriptors.fingerprints.maccs.MaccsParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.overlap.cli.MadfastImport
  • com.chemaxon.overlap.cli.MadfastImportParameters
  • com.chemaxon.overlap.cli.MadfastImportParameters.NoSplitter (implements com.beust.jcommander.converters.IParameterSplitter)
  • com.chemaxon.overlap.cli.MadfastImportStat
  • com.chemaxon.overlap.cli.util.pipeline.Mark (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.io.MasterMoleculeStorageImpl (implements com.chemaxon.overlap.io.MasterMoleculeStorage)
  • com.chemaxon.overlap.io.MasterStorages
  • com.chemaxon.overlap.io.MasterStorages.MoleculeCallbackBuilder (implements com.chemaxon.overlap.io.MoleculeCallback)
  • com.chemaxon.descriptors.db.MDTableReader<D>
    • com.chemaxon.descriptors.fingerprints.cfp.CfpTableReader
      • com.chemaxon.descriptors.fingerprints.cfp.CfpTableReaderImpl
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpTableReader
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpTableReaderImpl
    • com.chemaxon.descriptors.fingerprints.pf2d.PfTableReader
      • com.chemaxon.descriptors.fingerprints.pf2d.PfTableReaderImpl
  • com.chemaxon.overlap.wui.dto.MemoryPoolInfoDto
  • com.chemaxon.overlap.wui.dto.MemoryUsageDescDto
  • com.chemaxon.overlap.cli.prof.Memstat
  • com.chemaxon.overlap.wui.resources.MetaResource
  • com.chemaxon.descriptors.metrics.MetricFactory.ToLinenote<C> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.wui.resources.MolConverter
  • com.chemaxon.calculations.logging.moleculeawarelog.MoleculeAwareLog (implements org.apache.commons.logging.Log)
  • com.chemaxon.overlap.io.MoleculeCallbacks
  • com.chemaxon.overlap.io.MoleculeCallbacks.IndexToNameStoringCallback (implements com.chemaxon.overlap.io.MoleculeCallback)
  • com.chemaxon.overlap.wui.res.MoleculeContainerImpl (implements com.chemaxon.overlap.wui.res.MoleculeContainer)
  • com.chemaxon.clustering.framework.MoleculeFrameworks
  • com.chemaxon.overlap.wui.dto.MoleculeIds
  • com.chemaxon.overlap.wui.dto.MoleculeInfo
  • com.chemaxon.calculations.io.MoleculeIo
  • com.chemaxon.overlap.wui.context.MoleculeParsingMessageBodyReader (implements javax.ws.rs.ext.MessageBodyReader<T>)
  • com.chemaxon.overlap.wui.dto.MoleculeProp
  • com.chemaxon.overlap.wui.dto.MoleculePropInfo
  • com.chemaxon.overlap.wui.dto.MoleculePropRange
  • com.chemaxon.overlap.wui.dto.MoleculeProps
  • com.chemaxon.overlap.wui.context.Molecules (implements com.chemaxon.overlap.wui.context.ResourceClass<T>)
  • com.chemaxon.overlap.wui.dto.MoleculeSetInfo
  • com.chemaxon.overlap.wui.dto.MoleculeSetsInfo
  • com.chemaxon.overlap.wui.resources.MoleculesResource
  • com.chemaxon.clustering.common.MolInputBuilder
  • com.chemaxon.clustering.common.MolInputImpl<D> (implements com.chemaxon.clustering.common.MolInput)
  • com.chemaxon.overlap.cli.util.prop.impl.MolnamePropertyExtractor (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractor<T>)
  • com.chemaxon.overlap.cli.util.prop.impl.MolnamePropertyExtractorFactory (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractorFactory)
  • com.chemaxon.overlap.cli.util.prop.MolProp<T> (implements java.io.Serializable)
  • com.chemaxon.overlap.servlets.MolsContext
  • com.chemaxon.overlap.wui.res.MolsRes (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasSizeinfo)
  • com.chemaxon.overlap.wui.dto.MostSimilarsRequest
  • com.chemaxon.overlap.wui.dto.MostSimilarsResult
  • com.chemaxon.calculations.util.MU
  • com.chemaxon.calculations.util.MU.BondList
  • com.chemaxon.overlap.wui.dto.MultiConversionRequest
  • com.chemaxon.overlap.wui.dto.MultiConversionResult
  • com.chemaxon.calculations.common.NoOverflowAutoDoneProgressObserver (implements com.chemaxon.calculations.common.ProgressObserver)
  • com.chemaxon.overlap.wui.application.NormalizeUriFilter (implements javax.ws.rs.container.ContainerRequestFilter)
  • com.chemaxon.calculations.common.ObservableProgressObserver (implements com.chemaxon.calculations.common.ProgressObservable, com.chemaxon.calculations.common.ProgressObserver)
  • com.chemaxon.overlap.partialresult.OneKeeperPartialResultHolder<R> (implements com.chemaxon.overlap.partialresult.PartialResultHolder<R>)
  • com.chemaxon.calculations.io.OrderedElements
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • com.chemaxon.overlap.cli.util.pipeline.OutputStreamStatCollector
  • com.chemaxon.overlap.context.OverlapAnalysisContext<D,T> (implements com.chemaxon.descriptors.common.Guarded, java.io.Serializable)
  • com.chemaxon.overlap.OverlapAnalysisContextFactory
  • com.chemaxon.descriptors.alternates.OverlapAnalysisContextWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.overlap.version.OverlapVersion
  • com.chemaxon.overlap.version.OverlapVersionInfo (implements java.io.Serializable)
  • com.chemaxon.overlap.cli.util.pages.PagedBuilder<T>
  • com.chemaxon.overlap.cli.PagedDescriptorImport
  • com.chemaxon.overlap.cli.PagedDescriptorImportParameters
  • com.chemaxon.overlap.storage.PagedDescriptorStorage<D> (implements com.chemaxon.overlap.io.Updater<D>)
  • com.chemaxon.overlap.ParameterizedContextFactory
  • com.chemaxon.apidiscovery.ParameterWrapper
  • com.chemaxon.overlap.cli.util.importing.ParseCustomToDescriptor<D> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.cli.util.importing.ParseCustomToUnguarded<D,T> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.cli.util.importing.ParsedDescriptorResult<D>
  • com.chemaxon.overlap.cli.util.importing.ParsedDescriptorResultHandler<D> (implements com.chemaxon.overlap.concurrent.ErrorHandler<S>, com.chemaxon.overlap.concurrent.ResultHandler<S,T>)
  • com.chemaxon.overlap.cli.util.importing.ParsedUnguardedResult<T>
  • com.chemaxon.overlap.cli.util.importing.ParsedUnguardedResultHandler<T> (implements com.chemaxon.overlap.concurrent.ErrorHandler<S>, com.chemaxon.overlap.concurrent.ResultHandler<S,T>)
  • com.chemaxon.overlap.cli.util.importing.ParsedUnguardedWithMolResult<T>
  • com.chemaxon.overlap.cli.util.importing.ParsedUnguardedWithMolResultHandler<T> (implements com.chemaxon.overlap.concurrent.ErrorHandler<S>, com.chemaxon.overlap.concurrent.ResultHandler<S,T>)
  • com.chemaxon.virtuallib.sc.cli.ParseSdf
  • com.chemaxon.virtuallib.sc.cli.ParseSdfParameters
  • com.chemaxon.overlap.cli.util.importing.ParseStructureRecordToUnguarded<D,T> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.overlap.cli.util.importing.ParseStructureRecordToUnguardedWithMol<D,T> (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.descriptors.alternates.Pf2dWrapper (implements com.chemaxon.descriptors.alternates.DescriptorWrapper)
  • com.chemaxon.descriptors.fingerprints.pf2d.PfComparatorImpl (implements com.chemaxon.descriptors.fingerprints.pf2d.PfComparator)
  • com.chemaxon.descriptors.fingerprints.pf2d.PfParameters (implements com.chemaxon.descriptors.common.DescriptorParameters)
  • com.chemaxon.descriptors.fingerprints.pf2d.PfParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.fingerprints.pf2d.PfTableReaderImpl.PfReaderFactoryImpl (implements com.chemaxon.descriptors.fingerprints.pf2d.PfTableReader.Factory)
  • com.chemaxon.overlap.cli.PipelineRunner (implements com.chemaxon.overlap.cli.util.pipeline.PipelineContext)
  • com.chemaxon.overlap.cli.PipelineRunner.Connection<T>
  • com.chemaxon.overlap.cli.PipelineRunner.IO<T>
  • com.chemaxon.overlap.wui.dto.PmapperFeature
  • com.chemaxon.overlap.wui.dto.PmapperRequest
  • com.chemaxon.overlap.wui.dto.PmapperResponse
  • com.chemaxon.overlap.cli.PrepareMolecules
  • com.chemaxon.overlap.cli.PrepareMoleculesParameters
  • com.chemaxon.overlap.concurrent.impl.ProcessorImpl (implements com.chemaxon.overlap.concurrent.Processor)
  • com.chemaxon.overlap.concurrent.Processors
  • com.chemaxon.overlap.cli.prof.Prof (implements java.io.Closeable)
  • com.chemaxon.overlap.wui.res.ProfRes (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasBasicSizeinfo)
  • com.chemaxon.overlap.wui.resources.ProfResResource
  • com.chemaxon.overlap.cli.prof.ProfSnapshot
  • com.chemaxon.overlap.cli.prof.ProfSnapshot.GarbageCollector
  • com.chemaxon.overlap.cli.prof.ProfSnapshot.MemoryPool
  • com.chemaxon.overlap.cli.prof.ProfSnapshot.MemoryUsageDesc
  • com.chemaxon.overlap.wui.dto.ProfSnapshotDto
  • com.chemaxon.overlap.cli.util.pipeline.ProgressiveSerializationImpl (implements com.chemaxon.overlap.cli.util.pipeline.ProgressiveSerialization)
  • com.chemaxon.overlap.cli.util.pipeline.ProgressiveSerializationImpl.DeserializerImpl<T> (implements com.chemaxon.overlap.persistence.serialization.Deserializer<T>)
  • com.chemaxon.overlap.cli.util.pipeline.ProgressiveSerializeToFile (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.calculations.common.ProgressObservers
  • com.chemaxon.overlap.io.PropertyCollectorCallback (implements com.chemaxon.overlap.io.MoleculeCallback)
  • com.chemaxon.overlap.cli.util.prop.PropertyExtractors
  • com.chemaxon.overlap.cli.util.images.Px2d
  • com.chemaxon.overlap.wui.RealTimeSeaarchGuiParmateres
  • com.chemaxon.overlap.wui.RealTimeSeaarchGuiParmateres.NoSplitter (implements com.beust.jcommander.converters.IParameterSplitter)
  • com.chemaxon.overlap.wui.RealTimeSearchGui
  • com.chemaxon.overlap.wui.RealTimeSearchGuiContext
  • com.chemaxon.descriptors.common.reflect.Reflect
  • com.chemaxon.clustering.framework.RemoveSidechainsMolwalk (implements com.chemaxon.overlap.io.StandardizerWrapper)
  • com.chemaxon.clustering.framework.RemoveSidechainsSc (implements com.chemaxon.overlap.io.StandardizerWrapper)
  • com.chemaxon.overlap.wui.dto.ResourceClassInfoDto
  • com.chemaxon.overlap.wui.dto.ResourceClassInfosDto
  • com.chemaxon.descriptors.common.reflect.ReturnValueTransformingInvocationHandler (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.virtuallib.sc.model.sdf.RgDefiniton (implements java.io.Serializable)
  • com.chemaxon.virtuallib.sc.model.sdf.RgDefiniton.EnumeratedExtension
    • com.chemaxon.virtuallib.sc.model.sdf.RgDefiniton.ScoredExtension
  • com.chemaxon.virtuallib.sc.model.sdf.RgFrag (implements java.io.Serializable)
  • com.chemaxon.calculations.util.cellfield.impl.RowImpl (implements com.chemaxon.calculations.util.cellfield.Row)
  • com.chemaxon.virtuallib.sc.model.sdf.Scaffold (implements java.io.Serializable)
  • com.chemaxon.virtuallib.sc.model.sdf.ScaffoldExtension (implements java.io.Serializable)
  • com.chemaxon.virtuallib.sc.model.sdf.ScaffoldExtensionBuilder (implements java.io.Serializable)
  • com.chemaxon.overlap.servlets.ScalarFilter (implements com.google.common.base.Predicate<T>)
  • com.chemaxon.descriptors.common.realvector.ScaledBytesFloatVectorDescriptorImpl (implements com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor)
  • com.chemaxon.descriptors.common.comparison.impl.ScaledBytesFvComparisonContextFactory (implements com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.scaledbytesfv.ScaledBytesFvEuclid (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.extractors.ScaledBytesFvExtractor (implements com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.scaledbytesfv.ScaledBytesFvTanimoto (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.realvector.ScaledShortsFloatVectorDescriptor (implements com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor, java.io.Serializable)
  • com.chemaxon.descriptors.common.comparison.impl.ScaledShortsFvCoparisonContextFactory (implements com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.scaledshortsfv.ScaledShortsFvEuclid (implements java.io.Serializable, com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.extractors.ScaledShortsFvExtractor (implements com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T>)
  • com.chemaxon.overlap.cli.util.prop.impl.SdfPropertyExtractor<T> (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractor<T>)
  • com.chemaxon.overlap.cli.util.prop.impl.SdfPropertyExtractorFactory (implements com.chemaxon.overlap.cli.util.prop.PropertyExtractorFactory)
  • com.chemaxon.calculations.io.formats.SdfSegmenter (implements com.chemaxon.calculations.io.Segmenter)
  • com.chemaxon.overlap.cli.SearchStorage
  • com.chemaxon.overlap.cli.SearchStorageParameters
  • com.chemaxon.overlap.cli.SearchStorageStat
  • com.chemaxon.overlap.splits.SecondToken (implements com.google.common.base.Function<F,T>)
  • com.chemaxon.calculations.io.Segmenters
  • com.chemaxon.overlap.servlets.SelfKnnFilterImpl (implements com.chemaxon.overlap.servlets.SelfKnnFilter)
  • com.chemaxon.overlap.servlets.SelfKnnFilters
  • com.chemaxon.overlap.wui.SelfOverlapGui
  • com.chemaxon.overlap.wui.SelfOverlapGuiContext
  • com.chemaxon.overlap.wui.SelfOverlapGuiParmateres
  • com.chemaxon.overlap.util.idgenerator.SequentialIdGenerator (implements com.chemaxon.overlap.util.idgenerator.IdGenerator)
  • com.chemaxon.overlap.persistence.serialization.SerializationUtil
  • com.chemaxon.overlap.storage.SerializeTask<D> (implements java.util.concurrent.Callable<V>)
  • com.chemaxon.descriptors.common.comparison.impl.SerializingComparisonContextFactory<DC,D> (implements com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>)
  • com.chemaxon.descriptors.common.unguarded.impl.calc.SerializingUnguardedDissimilarityCalculator (implements com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.common.unguarded.impl.extractors.SerializingUnguardedExtractor<T> (implements com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T>)
  • com.chemaxon.apidiscovery.util.ServiceUtil
  • com.chemaxon.descriptors.alignment.shape.Shape (implements com.chemaxon.descriptors.alignment.ShapeDescriptor)
  • com.chemaxon.descriptors.alignment.shape.ShapeComparatorParameter.Builder (implements com.chemaxon.descriptors.alignment.FlexibilityModeParameterBuilder, com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.alignment.shape.ShapeGeneratorParameter.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.overlap.result.impl.SimilarityResultImpl (implements com.chemaxon.overlap.result.SimilarityResult)
  • com.chemaxon.overlap.result.impl.SimilarityResultsImpl (implements com.chemaxon.overlap.result.SimilarityResults)
  • com.chemaxon.descriptors.common.binary.SimpleComparisonResult (implements com.chemaxon.descriptors.common.ComparisonResult)
  • com.chemaxon.overlap.wui.res.SimpleDescribedResource<T> (implements com.chemaxon.overlap.wui.res.DescribedResource<T>)
  • com.chemaxon.clustering.framework.SimpleFrameworkAssociation<T> (implements com.chemaxon.clustering.framework.FrameworkIndex<F>, java.io.Serializable)
  • com.chemaxon.overlap.cli.util.images.SimplePane (implements com.chemaxon.overlap.cli.util.images.Area, com.chemaxon.overlap.cli.util.images.SubPane)
  • com.chemaxon.overlap.partialresult.SimplePartialResultHolder<R> (implements com.chemaxon.overlap.partialresult.PartialResultHolder<R>)
  • com.chemaxon.descriptors.common.reflect.SingleArgumentTransformingInvocationHandler (implements com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler)
  • com.chemaxon.clustering.singlelinkage.SingleLinkage
  • com.chemaxon.descriptors.common.reflect.SingleMethodForwardingInvocationHandler (implements java.lang.reflect.InvocationHandler)
  • com.chemaxon.descriptors.alternates.cli.SingleThreadDescriptorGenerator
  • com.chemaxon.descriptors.alternates.cli.SingleThreadedDescriptorGeneratorParameters
  • com.chemaxon.descriptors.alternates.cli.SingleThreadedDescriptorGeneratorStat
  • com.chemaxon.overlap.wui.dto.SizeInfoDetailDto
  • com.chemaxon.overlap.wui.dto.SizeInfoDto
  • com.chemaxon.overlap.wui.SlowlyDeserializingMms (implements com.chemaxon.overlap.persistence.serialization.Deserializer<T>)
  • com.chemaxon.overlap.wui.SlowUnguardedComparator<T> (implements com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>)
  • com.chemaxon.descriptors.fingerprints.maccs.SmaInterpreter
  • com.chemaxon.descriptors.fingerprints.maccs.cli.SmaPieces
  • com.chemaxon.calculations.io.formats.SmilesSegmenter (implements com.chemaxon.calculations.io.Segmenter)
  • com.chemaxon.clustering.sphex.SphereExclusion
  • com.chemaxon.calculations.common.SplitObserver (implements com.chemaxon.calculations.common.ProgressObserver)
  • com.chemaxon.overlap.cli.util.importing.Splitting
  • com.chemaxon.overlap.io.StandardizerWrappers
  • com.chemaxon.overlap.wui.StartupHandler
  • com.chemaxon.overlap.wui.dto.StatisticsDto
  • com.chemaxon.overlap.wui.resources.StatisticsResource
  • com.chemaxon.calculations.common.StatPO (implements com.chemaxon.calculations.common.SubProgressObserver)
  • com.chemaxon.overlap.wui.res.StatRes (implements com.chemaxon.overlap.wui.res.Described, com.chemaxon.overlap.wui.res.HasBasicSizeinfo)
  • com.chemaxon.overlap.wui.resources.StatResResource
  • com.chemaxon.overlap.wui.application.StatusFilter (implements javax.ws.rs.container.ContainerResponseFilter)
  • com.chemaxon.overlap.cli.util.Strings
  • com.chemaxon.overlap.cli.util.Strings.Stringpoint
  • com.chemaxon.calculations.io.StructureRecordIterators
  • com.chemaxon.calculations.io.StructureRecords
  • com.chemaxon.overlap.service.task.Task
    • com.chemaxon.overlap.service.task.ExecutableTask<R>
  • com.chemaxon.overlap.wui.dto.TaskDto
  • com.chemaxon.overlap.presenter.TaskPresenter
  • com.chemaxon.overlap.service.task.TaskService
  • com.chemaxon.overlap.cli.util.pipeline.TextFileInput (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.cli.util.pipeline.TextFileOutput (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.descriptors.fingerprints.ecfp.ThreadLocalizedEcfpParameters (implements com.chemaxon.descriptors.common.DescriptorParameters, java.io.Serializable)
  • com.chemaxon.descriptors.fingerprints.ecfp.ThreadLocalizedEcfpParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.descriptors.fingerprints.pf2d.ThreadLocalizedPfParameters (implements com.chemaxon.descriptors.common.DescriptorParameters)
  • com.chemaxon.descriptors.fingerprints.pf2d.ThreadLocalizedPfParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.chemaxon.overlap.service.async.AsyncCallService.AsyncCallIdNotFoundException
        • com.chemaxon.calculations.util.CmdlineContext.ExitWithNonZeroStatus
        • com.chemaxon.calculations.util.CmdlineContext.ExitWithZeroStatus
        • java.lang.IllegalArgumentException
          • com.chemaxon.calculations.io.OrderedInputProcessingException
        • com.chemaxon.descriptors.alignment.ShapeComparatorException
        • com.chemaxon.descriptors.alignment.ShapeGeneratorException
        • com.chemaxon.overlap.service.task.TaskService.TaskNotDeletableException
        • com.chemaxon.overlap.service.task.TaskService.TaskNotFoundException
        • com.chemaxon.overlap.wui.resources.exceptions.WuiException
          • com.chemaxon.overlap.wui.resources.exceptions.WuiBadRequestException
          • com.chemaxon.overlap.wui.resources.exceptions.WuiForbiddenException
          • com.chemaxon.overlap.wui.resources.exceptions.WuiInternalServerErrorException
          • com.chemaxon.overlap.wui.resources.exceptions.WuiNotFoundException
  • com.chemaxon.calculations.common.Timer
  • com.chemaxon.calculations.common.TimerStatistics
  • com.chemaxon.overlap.cli.util.pipeline.ToLines (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.overlap.cli.util.pipeline.ToSdfs (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.calculations.util.ToStrings
  • com.chemaxon.overlap.cli.util.pipeline.TransformMolecule (implements com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
  • com.chemaxon.descriptors.metrics.TverskyParameters (implements com.chemaxon.descriptors.metrics.BinaryVectorComparator, com.chemaxon.descriptors.metrics.MetricMetadata, java.io.Serializable)
  • com.chemaxon.descriptors.metrics.TverskyParameters.Builder (implements com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>)
  • com.chemaxon.calculations.util.U
  • com.chemaxon.descriptors.common.unguarded.impl.UnguardedContextImpl<D,T> (implements com.chemaxon.descriptors.common.unguarded.UnguardedContext<D,T>)
  • com.chemaxon.overlap.bruteforce.UnguardedPagedOverlap<T> (implements java.io.Serializable)
  • com.chemaxon.overlap.storage.impl.UnguardedPagedStorageImpl<T> (implements com.chemaxon.overlap.storage.UnguardedPagedStorage<T>)
  • com.chemaxon.overlap.unguarded.Unguardeds
  • com.chemaxon.clustering.common.UnitPathAssigner
  • com.google.common.collect.UnmodifiableIterator<E> (implements java.util.Iterator<E>)
    • com.google.common.collect.AbstractIterator<T>
      • com.chemaxon.calculations.io.CloseableAbstractIterator<T> (implements com.chemaxon.calculations.io.CloseableIterator<T>)
        • com.chemaxon.calculations.io.MemoizingIterator<E,R> (implements com.chemaxon.calculations.io.MemoizedSparseCollection<T>)
          • com.chemaxon.calculations.io.SmilesMemoizingMoleculeIterator
        • com.chemaxon.overlap.io.StructureRecordIterator
      • com.chemaxon.overlap.cli.util.JsLineFilter
      • com.chemaxon.overlap.cli.util.MultiInputCloseableIterator<T,CI> (implements java.io.Closeable)
  • com.chemaxon.overlap.io.Util
  • com.chemaxon.clustering.util.Util
  • com.chemaxon.descriptors.db.Util
  • com.chemaxon.descriptors.common.realvector.Util
  • com.chemaxon.clustering.util.Util.StringScatterPlot
  • com.chemaxon.screen.Utils
  • com.chemaxon.descriptors.fingerprints.maccs.Utils
  • com.chemaxon.overlap.util.idgenerator.UUIDGenerator (implements com.chemaxon.overlap.util.idgenerator.IdGenerator)
  • com.chemaxon.calculations.util.V3D
  • com.chemaxon.overlap.cli.util.images.VFlowPane (implements com.chemaxon.overlap.cli.util.images.SubPane)
  • com.chemaxon.overlap.wui.resources.exceptions.WuiExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
  • com.chemaxon.descriptors.fingerprints.ecfp.XmlUtils

Interface Hierarchy

• com.chemaxon.overlap.cli.util.images.Area
• com.chemaxon.overlap.cli.util.images.AreaSpec
• com.chemaxon.overlap.result.AsyncResult<T>
• java.lang.AutoCloseable
  • java.io.Closeable
    • com.chemaxon.calculations.io.CloseableIterator<T> (also extends java.util.Iterator<E>)
    • com.chemaxon.calculations.io.CloseableSink<T> (also extends com.chemaxon.calculations.io.Sink<T>)
      • com.chemaxon.calculations.io.CloseableStringSink
  • com.chemaxon.overlap.cli.util.pipeline.ProgressiveSerialization
  • com.chemaxon.calculations.common.ProgressObserver (also extends com.chemaxon.calculations.common.CancelObserver)
    • com.chemaxon.calculations.common.SubProgressObserver
• com.chemaxon.calculations.common.AutoThrottle
• com.chemaxon.overlap.concurrent.BppManagerMBean
• com.chemaxon.descriptors.vectors.binary.BvParameters.ConstructBvGenerator
• com.chemaxon.calculations.common.CancelObserver
  • com.chemaxon.calculations.common.ProgressObserver (also extends java.lang.AutoCloseable)
    • com.chemaxon.calculations.common.SubProgressObserver
  • com.chemaxon.calculations.common.SubProgressObserver
• com.chemaxon.calculations.util.cellfield.CellFields.ConstructNewCellFieldImpl
• com.chemaxon.descriptors.fingerprints.cfp.CfpParameters.ConstructCfpGenerator
• com.chemaxon.apidiscovery.linenote.ChoiceParameterValueProvider
  • com.chemaxon.apidiscovery.linenote.ParseRes
• com.chemaxon.apidiscovery.linenote.ChoiceValueParameterParser<T>
• com.chemaxon.overlap.cli.invocation.CliEntry<PT>
• com.chemaxon.overlap.cli.invocation.CliEntry2<PT,ST>
• com.chemaxon.overlap.cli.invocation.CliInvocationEnv
• com.chemaxon.overlap.cli.invocation.CliInvocationEnv2<ST>
• com.chemaxon.overlap.cli.invocation.CliInvocationSpec<PT>
• com.chemaxon.overlap.cli.invocation.CliInvocationSpec2<PT,ST>
• com.chemaxon.clustering.common.Cluster<T>
  • com.chemaxon.clustering.common.HierarchicCluster<T>
    • com.chemaxon.clustering.common.IDBasedHierarchicCluster
  • com.chemaxon.clustering.common.IDBasedHierarchicCluster
• com.chemaxon.calculations.util.CmdlineContext
• com.chemaxon.calculations.util.cellfield.Column<T>
• com.chemaxon.descriptors.common.ComparisonResult
  • com.chemaxon.descriptors.alignment.ShapeComparisonResult
• com.chemaxon.calculations.common.ConsolePO.Callback
• java.util.function.Consumer<T>
  • com.chemaxon.calculations.io.Sink<T>
    • com.chemaxon.calculations.io.CloseableSink<T> (also extends java.io.Closeable)
      • com.chemaxon.calculations.io.CloseableStringSink
    • com.chemaxon.calculations.io.CloseableStringSink
• com.chemaxon.overlap.wui.res.Described
• com.chemaxon.overlap.wui.res.DescribedResource<T>
• com.chemaxon.descriptors.alternates.DescriptorWrapper
• com.chemaxon.clustering.common.DissimilarityInput
  • com.chemaxon.clustering.common.MolInput
• com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters.ConstructEcfpGenerator
• com.chemaxon.overlap.concurrent.ErrorHandler<S>
• com.chemaxon.descriptors.alignment.FlexibilityModeParameterBuilder
• com.chemaxon.clustering.framework.FrameworkClusteringResults
• com.chemaxon.clustering.framework.FrameworkIndex<F>
• java.util.function.Function<T,R>
  • com.google.common.base.Function<F,T>
    • com.chemaxon.apidiscovery.linenote.InstantiateChoice<T>
    • com.chemaxon.descriptors.common.reflect.SerializableFunction<F,T> (also extends java.io.Serializable)
    • com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T> (also extends com.chemaxon.descriptors.common.Guarded, java.io.Serializable)
• com.chemaxon.overlap.wui.res.HasBasicSizeinfo
• com.chemaxon.overlap.wui.res.HasSizeinfo
• com.chemaxon.clustering.common.HierarchicClustering<T,C>
  • com.chemaxon.clustering.common.IDBasedHierarchicClustering
• com.chemaxon.clustering.common.IDBasedClusterBuilderSpec
• com.chemaxon.overlap.util.idgenerator.IdGenerator
• com.chemaxon.overlap.util.idgenerator.IdGeneratorFactory
• com.chemaxon.overlap.persistence.serialization.IndirectSerializable<T>
  • com.chemaxon.overlap.io.MasterMoleculeStorage (also extends com.chemaxon.overlap.io.MasterStorage<T>, java.io.Serializable)
  • com.chemaxon.overlap.io.MasterStringStorage (also extends com.chemaxon.overlap.io.MasterStorage<T>, java.io.Serializable)
• java.lang.reflect.InvocationHandler
  • com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler (also extends java.io.Serializable)
• java.lang.Iterable<T>
  • com.chemaxon.virtuallib.sc.model.sdf.AttachmentGroup (also extends java.io.Serializable)
    • com.chemaxon.virtuallib.sc.model.sdf.IndexedAttachmentGroup
  • com.chemaxon.calculations.util.cellfield.CellField
• java.util.Iterator<E>
  • com.chemaxon.calculations.io.CloseableIterator<T> (also extends java.io.Closeable)
• com.chemaxon.screen.desktop.JettyStarter.ServerWrapper
• com.chemaxon.screen.desktop.JettyStarter.SslKeystoreSpec
• com.chemaxon.clustering.wards.LanceWilliamsMerge
• com.chemaxon.overlap.concurrent.Launch
  • com.chemaxon.overlap.concurrent.OptErrorH<S>
• com.chemaxon.clustering.common.LevelAssigner<L,T>
  • com.chemaxon.clustering.common.IDBasedAssigner
• com.chemaxon.apidiscovery.linenote.Linenote<T>
• com.chemaxon.apidiscovery.linenote.LinenoteBuilder<T>
• com.chemaxon.descriptors.fingerprints.maccs.MaccsParameters.ConstructMaccsGenerator
• com.chemaxon.overlap.io.MasterStorages.MasterStorageBuilder<T>
• com.chemaxon.descriptors.db.MDReaderFactory
  • com.chemaxon.descriptors.fingerprints.cfp.CfpTableReader.Factory
  • com.chemaxon.descriptors.fingerprints.ecfp.EcfpTableReader.Factory
  • com.chemaxon.descriptors.fingerprints.pf2d.PfTableReader.Factory
• com.chemaxon.calculations.io.MemoizedSparseCollection<T>
• com.chemaxon.overlap.io.MoleculeCallback
  • com.chemaxon.overlap.io.MoleculeCallbacks.CountingMoleculeCallback
• com.chemaxon.overlap.wui.res.MoleculeContainer
• com.chemaxon.overlap.cli.util.OptionalSource<T>
• com.chemaxon.calculations.io.OrderedElement<T>
• com.chemaxon.overlap.cli.util.images.Paint
• com.chemaxon.apidiscovery.interfaces.ParameterBuilder<T>
• com.chemaxon.overlap.partialresult.PartialResultConsumer<R>
  • com.chemaxon.overlap.partialresult.PartialResultHolder<R> (also extends com.chemaxon.overlap.partialresult.PartialResultProvider<R>)
• com.chemaxon.overlap.partialresult.PartialResultProvider<R>
  • com.chemaxon.overlap.partialresult.PartialResultHolder<R> (also extends com.chemaxon.overlap.partialresult.PartialResultConsumer<R>)
• com.chemaxon.descriptors.fingerprints.pf2d.PfParameters.ConstructPfGenerator
• com.chemaxon.overlap.cli.util.pipeline.PipelineContext
• com.chemaxon.overlap.cli.util.pipeline.PipelineStep
• com.chemaxon.clustering.util.PostOrderDfsVisitor<T>
• com.chemaxon.overlap.concurrent.Processor
• com.chemaxon.calculations.common.ProgressObservable
• com.chemaxon.overlap.cli.util.prop.PropertyExtractorFactory
• com.chemaxon.overlap.cli.util.images.Range
• com.chemaxon.overlap.cli.util.images.RangeSpec
• com.chemaxon.descriptors.common.reflect.Reflect.Proxied
• com.chemaxon.overlap.cli.util.images.Renderer
• com.chemaxon.overlap.wui.context.ResourceClass<T>
• com.chemaxon.overlap.concurrent.ResultHandler<S,T>
• com.chemaxon.calculations.util.cellfield.Row
• com.chemaxon.calculations.util.cellfield.RowBuilder
• com.chemaxon.calculations.util.SeekableFileOutput
• com.chemaxon.calculations.io.Segmenter
• com.chemaxon.overlap.servlets.SelfKnnFilter
• java.io.Serializable
  • com.chemaxon.virtuallib.sc.model.sdf.AttachmentGroup (also extends java.lang.Iterable<T>)
    • com.chemaxon.virtuallib.sc.model.sdf.IndexedAttachmentGroup
  • com.chemaxon.descriptors.metrics.BinaryVectorComparator (also extends com.chemaxon.descriptors.metrics.MetricMetadata)
  • com.chemaxon.apidiscovery.linenote.ChoiceDescriptor
  • com.chemaxon.apidiscovery.linenote.ChoiceParameterDescriptor<T>
  • com.chemaxon.descriptors.common.comparison.ComparisonContext<DC,D,T> (also extends com.chemaxon.descriptors.common.Guarded)
  • com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T> (also extends com.chemaxon.descriptors.common.Guarded, com.chemaxon.descriptors.metrics.MetricFactory<C>)
    • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
  • com.chemaxon.descriptors.common.Descriptor (also extends com.chemaxon.descriptors.common.Guarded)
    • com.chemaxon.descriptors.common.BinaryVectorDescriptor
      • com.chemaxon.descriptors.fingerprints.cfp.Cfp
      • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
      • com.chemaxon.descriptors.fingerprints.maccs.Maccs
    • com.chemaxon.descriptors.fingerprints.cfp.Cfp
    • com.chemaxon.descriptors.alignment.DRShapeDescriptor
    • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
    • com.chemaxon.descriptors.common.FloatVectorDescriptor (also extends java.io.Serializable)
      • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends java.io.Serializable)
    • com.chemaxon.descriptors.fingerprints.maccs.Maccs
    • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends com.chemaxon.descriptors.common.FloatVectorDescriptor, java.io.Serializable)
    • com.chemaxon.descriptors.alignment.ShapeDescriptor
      • com.chemaxon.descriptors.alignment.DRShapeDescriptor
  • com.chemaxon.descriptors.common.DescriptorComparator<D> (also extends com.chemaxon.descriptors.common.Guarded)
    • com.chemaxon.descriptors.fingerprints.cfp.CfpComparator
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpComparator
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsComparator
    • com.chemaxon.descriptors.fingerprints.pf2d.PfComparator
    • com.chemaxon.descriptors.alignment.ShapeComparator<T>
  • com.chemaxon.descriptors.common.DescriptorGenerator<B> (also extends com.chemaxon.descriptors.common.DescriptorSerializer<B>)
    • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
    • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
  • com.chemaxon.descriptors.common.DescriptorParameters
  • com.chemaxon.descriptors.common.DescriptorSerializer<B> (also extends com.chemaxon.descriptors.common.Guarded)
    • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.common.DescriptorGenerator<B> (also extends java.io.Serializable)
      • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
  • com.chemaxon.overlap.cli.util.DescriptorsWithIds<T>
  • com.chemaxon.overlap.cli.util.DescriptorsWithMols<T>
  • com.chemaxon.overlap.persistence.serialization.Deserializer<T>
    • com.chemaxon.overlap.persistence.storage.DescriptorContainer.DescriptorContainerDeserializer
  • com.chemaxon.descriptors.metrics.FloatVectorComparator (also extends com.chemaxon.descriptors.metrics.MetricMetadata)
  • com.chemaxon.descriptors.common.FloatVectorDescriptor (also extends com.chemaxon.descriptors.common.Descriptor)
    • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends java.io.Serializable)
  • com.chemaxon.descriptors.common.Guarded
    • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>)
    • com.chemaxon.descriptors.common.BinaryVectorDescriptor
      • com.chemaxon.descriptors.fingerprints.cfp.Cfp
      • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
      • com.chemaxon.descriptors.fingerprints.maccs.Maccs
    • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.cfp.Cfp
    • com.chemaxon.descriptors.fingerprints.cfp.CfpComparator
    • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.common.comparison.ComparisonContext<DC,D,T> (also extends java.io.Serializable)
    • com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T> (also extends com.chemaxon.descriptors.metrics.MetricFactory<C>, java.io.Serializable)
      • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.Descriptor (also extends java.io.Serializable)
      • com.chemaxon.descriptors.common.BinaryVectorDescriptor
        • com.chemaxon.descriptors.fingerprints.cfp.Cfp
        • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
        • com.chemaxon.descriptors.fingerprints.maccs.Maccs
      • com.chemaxon.descriptors.fingerprints.cfp.Cfp
      • com.chemaxon.descriptors.alignment.DRShapeDescriptor
      • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
      • com.chemaxon.descriptors.common.FloatVectorDescriptor (also extends java.io.Serializable)
        • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
        • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends java.io.Serializable)
      • com.chemaxon.descriptors.fingerprints.maccs.Maccs
      • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends com.chemaxon.descriptors.common.FloatVectorDescriptor, java.io.Serializable)
      • com.chemaxon.descriptors.alignment.ShapeDescriptor
        • com.chemaxon.descriptors.alignment.DRShapeDescriptor
    • com.chemaxon.descriptors.common.DescriptorComparator<D> (also extends java.io.Serializable)
      • com.chemaxon.descriptors.fingerprints.cfp.CfpComparator
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpComparator
      • com.chemaxon.descriptors.fingerprints.maccs.MaccsComparator
      • com.chemaxon.descriptors.fingerprints.pf2d.PfComparator
      • com.chemaxon.descriptors.alignment.ShapeComparator<T>
    • com.chemaxon.descriptors.common.DescriptorGenerator<B> (also extends com.chemaxon.descriptors.common.DescriptorSerializer<B>, java.io.Serializable)
      • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
    • com.chemaxon.descriptors.common.DescriptorSerializer<B> (also extends java.io.Serializable)
      • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.common.DescriptorGenerator<B> (also extends java.io.Serializable)
        • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
        • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
        • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
        • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
        • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
        • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
        • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
    • com.chemaxon.descriptors.alignment.DRShapeDescriptor
    • com.chemaxon.descriptors.fingerprints.ecfp.Ecfp
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpComparator
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.FloatVectorDescriptor (also extends com.chemaxon.descriptors.common.Descriptor, java.io.Serializable)
      • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends java.io.Serializable)
    • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.maccs.Maccs
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsComparator
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.pf2d.PfComparator
    • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.pf2d.PharmacophoreFP
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends com.chemaxon.descriptors.common.FloatVectorDescriptor, java.io.Serializable)
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
    • com.chemaxon.descriptors.alignment.ShapeComparator<T>
    • com.chemaxon.descriptors.alignment.ShapeDescriptor
      • com.chemaxon.descriptors.alignment.DRShapeDescriptor
    • com.chemaxon.descriptors.common.unguarded.UnguardedContext<D,T> (also extends java.io.Serializable)
    • com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T> (also extends com.google.common.base.Function<F,T>, java.io.Serializable)
  • com.chemaxon.overlap.io.IndexProjector
  • com.chemaxon.overlap.result.LinearHistogram
  • com.chemaxon.descriptors.common.realvector.LinearScaler
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, java.io.Serializable)
  • com.chemaxon.overlap.io.MasterMoleculeStorage (also extends com.chemaxon.overlap.persistence.serialization.IndirectSerializable<T>, com.chemaxon.overlap.io.MasterStorage<T>)
  • com.chemaxon.overlap.io.MasterStorage<T>
    • com.chemaxon.overlap.io.MasterMoleculeStorage (also extends com.chemaxon.overlap.persistence.serialization.IndirectSerializable<T>, java.io.Serializable)
    • com.chemaxon.overlap.io.MasterStringStorage (also extends com.chemaxon.overlap.persistence.serialization.IndirectSerializable<T>, java.io.Serializable)
  • com.chemaxon.overlap.io.MasterStringStorage (also extends com.chemaxon.overlap.persistence.serialization.IndirectSerializable<T>, com.chemaxon.overlap.io.MasterStorage<T>)
  • com.chemaxon.descriptors.metrics.MetricFactory<C>
    • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>)
    • com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>
      • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>)
      • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.vectors.binary.BvGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.cfp.CfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T> (also extends com.chemaxon.descriptors.common.Guarded, java.io.Serializable)
      • com.chemaxon.descriptors.common.comparison.BinaryVectorComparisonContextFactory<T> (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>)
      • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>
      • com.chemaxon.descriptors.common.comparison.FloatVectorComparisonContextFactory (also extends com.chemaxon.descriptors.common.comparison.ComparisonContextFactory<DC,D,T>)
      • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>)
      • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
    • com.chemaxon.descriptors.vectors.floats.FvGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.fingerprints.maccs.MaccsGenerator (also extends com.chemaxon.descriptors.metrics.BinaryVectorMetricFactory<C>, com.chemaxon.descriptors.common.DescriptorGenerator<B>)
    • com.chemaxon.descriptors.fingerprints.pf2d.PfGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>)
    • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler, java.io.Serializable)
  • com.chemaxon.descriptors.metrics.MetricMetadata
    • com.chemaxon.descriptors.metrics.BinaryVectorComparator (also extends java.io.Serializable)
    • com.chemaxon.descriptors.metrics.FloatVectorComparator (also extends java.io.Serializable)
  • com.chemaxon.overlap.result.NnResults
    • com.chemaxon.overlap.result.KnnResults
  • com.chemaxon.overlap.cli.util.pipeline.ProgressiveDeserializer<T>
  • com.chemaxon.overlap.cli.util.prop.PropertyExtractor<T>
  • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptor (also extends com.chemaxon.descriptors.common.FloatVectorDescriptor)
  • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorFactory
  • com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorGenerator (also extends com.chemaxon.descriptors.common.DescriptorGenerator<B>, com.chemaxon.descriptors.metrics.FloatVectorMetricFactory<C>, com.chemaxon.descriptors.common.realvector.LinearScaler)
  • com.chemaxon.descriptors.common.reflect.SerializableFunction<F,T> (also extends com.google.common.base.Function<F,T>)
  • com.chemaxon.descriptors.common.reflect.SerializableInvocationHandler (also extends java.lang.reflect.InvocationHandler)
  • com.chemaxon.overlap.result.SimilarityResult
  • com.chemaxon.overlap.result.SimilarityResults
  • com.chemaxon.overlap.io.StandardizerWrapper
  • com.chemaxon.descriptors.common.unguarded.UnguardedContext<D,T> (also extends com.chemaxon.descriptors.common.Guarded)
  • com.chemaxon.descriptors.common.unguarded.UnguardedDissimilarityCalculator<T>
  • com.chemaxon.descriptors.common.unguarded.UnguardedExtractor<D,T> (also extends com.google.common.base.Function<F,T>, com.chemaxon.descriptors.common.Guarded)
  • com.chemaxon.overlap.storage.UnguardedPagedStorage<T>
• com.chemaxon.overlap.persistence.serialization.Serializer<T>
• com.chemaxon.clustering.util.SimpleDfsVisitor
• com.chemaxon.overlap.cli.util.images.SimplePaneFactory
  • com.chemaxon.overlap.cli.util.images.Rendering<T>
• com.chemaxon.clustering.common.SingleLevelClustering<T,C>
  • com.chemaxon.clustering.common.IDBasedSingleLevelClustering
• com.chemaxon.calculations.io.StructureRecord
• com.chemaxon.overlap.io.StructureRecord
• com.chemaxon.overlap.cli.util.images.SubPane
• java.util.function.Supplier<T>
  • com.google.common.base.Supplier<T>
    • com.chemaxon.overlap.wui.application.Application.AdditionalApplicationClassesProvider
• com.chemaxon.overlap.cli.util.TextTableBuilder
• com.chemaxon.descriptors.fingerprints.ecfp.ThreadLocalizedEcfpParameters.ConstructThreadLocalizedEcfpGenerator
• com.chemaxon.descriptors.fingerprints.pf2d.ThreadLocalizedPfParameters.ConstructThreadLocalizedPfGenerator
• com.chemaxon.overlap.unguarded.UnguardedVisitor<T>
• com.chemaxon.overlap.io.Updater<D>

Annotation Type Hierarchy

• com.chemaxon.overlap.wui.application.Status (implements java.lang.annotation.Annotation)
• com.chemaxon.overlap.wui.res.annotations.ResourceInfo (implements java.lang.annotation.Annotation)
• com.chemaxon.apidiscovery.annotations.Parametrized (implements java.lang.annotation.Annotation)
• com.chemaxon.apidiscovery.annotations.BuilderClass (implements java.lang.annotation.Annotation)
• com.chemaxon.apidiscovery.annotations.Parameter (implements java.lang.annotation.Annotation)
• com.chemaxon.apidiscovery.annotations.Description (implements java.lang.annotation.Annotation)
• com.chemaxon.apidiscovery.annotations.Creator (implements java.lang.annotation.Annotation)
• com.chemaxon.descriptors.common.reflect.Reflect.MetricFactory (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.chemaxon.overlap.cli.util.pipeline.TransformMolecule.Method
    • com.chemaxon.overlap.cli.PipelineRunner.IOType
    • com.chemaxon.overlap.cli.SearchStorage.SearchMode
    • com.chemaxon.overlap.cli.DumpStorage.DescOutFormat
    • com.chemaxon.descriptors.alternates.cli.SingleThreadDescriptorGenerator.IDSRC
    • com.chemaxon.descriptors.alternates.cli.SingleThreadDescriptorGenerator.IDLOC
    • com.chemaxon.descriptors.alternates.cli.SingleThreadDescriptorGenerator.IDSEPCHAR
    • com.chemaxon.overlap.wui.dto.SizeInfoMethod
    • com.chemaxon.overlap.wui.context.features.ServerFeature
    • com.chemaxon.calculations.logging.moleculeawarelog.Severity
    • com.chemaxon.calculations.util.CharLayout.HA
    • com.chemaxon.calculations.io.SimpleErrorHandling
    • com.chemaxon.overlap.cli.util.images.Halign
    • com.chemaxon.overlap.cli.util.images.Align
    • com.chemaxon.overlap.cli.util.images.Valign
    • com.chemaxon.clustering.common.HierarchicClustering.Alignment
    • com.chemaxon.apidiscovery.ParameterWrapper.ParameterType
    • com.chemaxon.apidiscovery.linenote.ChoiceParameterType
    • com.chemaxon.apidiscovery.ParameterSetMode
    • com.chemaxon.descriptors.metrics.BinaryMetrics (implements com.chemaxon.descriptors.metrics.BinaryVectorComparator)
    • com.chemaxon.descriptors.metrics.FloatVectorMetrics (implements com.chemaxon.descriptors.metrics.FloatVectorComparator, java.io.Serializable)
    • com.chemaxon.descriptors.vectors.floats.FvParameters.NumericRepresentation
    • com.chemaxon.descriptors.vectors.floats.FvParameters.SparseCompression
    • com.chemaxon.descriptors.vectors.binary.BvParameters.StringFormat
    • com.chemaxon.descriptors.alignment.ShapeMetrics (implements com.chemaxon.descriptors.metrics.MetricMetadata)
    • com.chemaxon.descriptors.alignment.ShapeFunction (implements java.io.Serializable)
    • com.chemaxon.descriptors.alignment.DRShapeMetrics (implements com.chemaxon.descriptors.metrics.MetricMetadata)
    • com.chemaxon.descriptors.alignment.AtomTyping (implements java.io.Serializable)
    • com.chemaxon.descriptors.fingerprints.ecfp.EcfpAtomTypizers
    • com.chemaxon.descriptors.common.BinaryVectors.Endianness